PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 496327
Common NameARALYDRAFT_496327
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 245aa    MW: 27316.6 Da    PI: 6.1659
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
496327genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.62e-2090140255
     AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
             +y+GVr+++ +g+++AeIrdp   + k  r++lg+++ta eAa+a+++a+ +l+g
  496327  90 HYRGVRRRP-WGKYAAEIRDP---NkKGSRIWLGTYDTAVEAARAYDQAAFQLRG 140
             7********.**********9...4345*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.3E-3289148IPR001471AP2/ERF domain
CDDcd000188.91E-3190148No hitNo description
PfamPF008472.7E-1490140IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-2490150IPR016177DNA-binding domain
PROSITE profilePS5103224.77790148IPR001471AP2/ERF domain
SMARTSM003806.2E-3790154IPR001471AP2/ERF domain
PRINTSPR003671.5E-1091102IPR001471AP2/ERF domain
PRINTSPR003671.5E-10114130IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
GVKMATKQEA LAIEFISQHL LTDFASMETD PSLFTNQVHN FHSETSPRTI SNQSPKPNST  60
LNQRKPPLPN LPVPRMVSTK TEKEEEEERH YRGVRRRPWG KYAAEIRDPN KKGSRIWLGT  120
YDTAVEAARA YDQAAFQLRG RKAILNFPLD IRATSETCFE EGAVGLGQRK RVKSSPPEEE  180
KEKVRVKVEE EESNTSETTE AEVEAVPLTP SSWMGFWDVG AGDGIFSIPP LSPTSPNFSV  240
ISVT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-2789151466ATERF1
3gcc_A1e-2789151466ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00572DAPTransfer from AT5G61600Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0886940.0AY088694.1 Arabidopsis thaliana clone 92102 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002866445.10.0hypothetical protein ARALYDRAFT_496327, partial
SwissprotQ9FKG11e-139EF104_ARATH; Ethylene-responsive transcription factor ERF104
TrEMBLD7MV400.0D7MV40_ARALL; Putative uncharacterized protein (Fragment)
STRINGfgenesh2_kg.8__2143__AT5G61600.11e-180(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM134641828
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61600.11e-123ethylene response factor 104